I think that I have tried them all but the only ones that have Jagpad support seem to be the ones in this very topic.
JagPad support versions:
Basic hard disk and floppy v. with improved framerate:http://atari.8bitchip.info/TestMe/PRE5.ZIP
HAGA v. with improved framerate - Falcon c. :http://atari.8bitchip.info/TestMe/OIDSJP.ZIP
The basic hard disk and floppy version PRE5.ZIP has white text on white background in the planet select screen but seems to work othewise. It has the same problem: The Jagpad A-button is not mapped to any control. (Fire would be preferred option here).
Surprisingly HAGA v. with improved framerate - Falcon c. OIDSJP.ZIP works well with my Ste 4 MB 1.62 UK TOS. Not sure what that Falcon c. refers to. The planet select screen works as it should so this is the best version so far for jagpad users. But! the Jagpad A-button is not mapped to fire so the problem still persist.
What can be done: in the ingame keyboard remap screen you can change the keyboard keys and this seems to correspond to jagpad controls. I managed to get the jagpad B-button to work as fire. But so far I have not been able to remap fire to A-button. We are one button away for a perfect version.
It is worth a mention that there is OIDS X for the Apple Power PPC line. That version has support for arcade sticks but it woul so cool to be able to play this original St game with ease.
I also asked others to test OIDS in the Finnish Atari user group and they had the same problems with Jagpad A-button.